Nativa, Sinop, v. 10, n. 3, p. 333-340, 2022.
Pesquisas Agrárias e Ambientais
DOI: https://doi.org/10.31413/nativa.v10i3.13177 ISSN: 2318-7670
Forest fragment grouping analysis under selective logging in Amazonian biome
Karen Janones da ROCHA1*, Édila Cristina de SOUZA2, Cyro Matheus Cometti FAVALESSA2,
Sidney Fernando CALDEIRA2, Silvo Alves RODRIGUES, Gilvano Ebling BRONDANI4*
1Federal University of Rondonia, Rolim de Moura, RO, Brazil.
2Federal University of Mato Grosso, Cuiabá, MT, Brazil.
4Federal University of Lavras, Lavras, MG, Brazil.
E-mail: karenrocha@unir.br; gilvano.brondani@ufla.br
ORCID: (0000-0002-2165-3081; 0000-0001-5528-8804; 0000-0002-6630-1979;
0000-0001-6042-4313; 0000-0001-9734-4907; 0000-0001-8640-5719)
Submitted on 2021/11/19; Accepted on 2022/07/18; Published on 2022/09/16.
ABSTRACT: The aim of this study was to analyse the existence of floristic groups in Seasonal Semi-deciduous
Forest fragments under the effects of selective logging located in Tapurah-MT. The given clusters were
allocated and measured, and each one had five subunits of 500 m². For each sampling unit, all of the arboreal
and shrub species with a diameter at breast height (DBH) equal to or greater than 10 cm were considered. In
the sampling subunits studied, the vegetation matrix was composed of the density of the 20 species in the
fragment with the greatest importance. The presence of floristic groups was verified by a grouping analysis
through the species association method. Euclidean distance with Hellinger’s transformation was used as a
similarity measure between the groupings, and Ward’s linking method was used for the dendrogram elaboration.
The number of groups was established by Kendall’s coefficient, and correlations between the groups and the
species were assessed. Once the concordance was determined, the number of groups in which the species were
correlated was chosen. The species’ auto-ecological characteristics, mainly the propagating material dispersion
type and average DBH, were the main factors responsible for the species association and similarity inside each
floristic group.
Keywords: similarity between species groups; species association; floristic group; environmental disturbance.
Análise de agrupamento de fragmento florestal sob efeitos da extração seletiva no
bioma amazônico
RESUMO: O objetivo deste estudo foi analisar a existência de grupos florísticos em fragmentos de Floresta
Estacional Semidecidual sob os efeitos da exploração madeireira seletiva localizada em Tapurah-MT. Os
transectos foram subdivididos em cinco subunidades de 500 . Para cada unidade amostral, foram
consideradas todas as árvores com DAP maior ou igual a 10 cm. Nas subunidades amostrais estudadas, a matriz
de vegetação foi composta pela densidade das 20 espécies de maior importância no fragmento. A presença de
grupos florísticos foi verificada por meio de uma análise de agrupamento pelo método de associação de
espécies. A distância euclidiana com a transformação de Hellinger foi usada como uma medida de similaridade
entre os agrupamentos, e o método de ligação de Ward foi usado para a elaboração do dendrograma. O número
de grupos foi estabelecido pelo coeficiente de Kendall e as correlações entre os grupos e as espécies foram
avaliadas. Uma vez determinada a concordância, optou-se pelo número de grupos em que as espécies estavam
correlacionadas. Foi verificado que as características auto-ecológicas das espécies, principalmente o tipo de
dispersão do material propagado e o DAP médio, foram os principais responsáveis pela associação e
similaridade das espécies dentro de cada grupo florístico.
Palavras-chave: similaridade entre grupos florísticos; associação de espécies; agrupamentos florísticos;
perturbação ambiental.
1. INTRODUCTION
Although there are laws that authorize logging in specific
areas, illegal logging is widespread in Brazil and in several
Amazonian countries. And despite selective logging only
targeting trees with commercial value, when not carried out
through instruments such as the Sustainable Forest
Management Plan (Plano de Manejo Florestal Sustentável
PMFS), the logging methods cause environmental damage.
Areas that were the object of selective logging are more
likely to be occupied by new residents and to suffer clear cuts
for the cultivation of pasture or grain, promoting the process
of forest fragmentation. And the consequences are serious,
fragmentation affects the organization of natural
communities, reduces biodiversity, increases the risk of
extinction of wild animals and compromises the ecological
services provided by the forest. Furthermore, the mere
presence of these fragments does not guarantee their
maintenance (ROCHA et al., 2017).
Biological diversity conservation strategies require studies
that quantify the existing species and their distribution in the
environment as well as provide knowledge on the
relationships between floristic composition and ecosystem
3
3Independent consultant in Forestry, Cuiabá, MT, Brazil.
Forest fragment grouping analysis under selective logging in Amazonian biome
Nativa, Sinop, v. 10, n. 3, p. 333-340, 2022.
334
diversity (PRIMACK; RODRIGUES, 2001). Conservation
initiatives, management and restoration of forest fragments
require detailed studies, such as flora inventories and the
ecology of plant communities (FARAH et al., 2017).
Grouping analysis, which is frequently used in scientific
projects, is a useful tool for understanding natural forest by
helping to detect specific floristic associations (SÜHS;
BUDKE, 2011; CHAI; WANG, 2016). The search for
species associations is often based on the non-tested
suppositions that species have nonrandom patterns of
association due to environmental control or biotic
interactions (LEGENDRE; LEGENDRE, 2012).
Under the hypothesis of environmental control, once
associations are verified, it is possible to focus on finding the
mutual ecological demands of most or even all species of an
association instead of having to describe the biology and
habitat of each species individually. Associations can be
better predictors of the environmental quality than the
individual species because associations are less affected by
sampling errors (LEGENDRE, 2005; LEGENDRE;
LEGENDRE, 2012).
In this context, the aim of the present study was to
analyse the existence of floristic groups and to evaluate which
are the main factors responsible for the association and
similarity of species within each floristic group in a fragment
of the Seasonal Semi-deciduous Forest under the effects of
selective logging.
2. MATERIALS AND E METHODS
A floristic and structural survey on a 32.98 ha fragment
was conducted in the municipality of Tapurah, Mato Grosso,
Brazil (12°28'5.67" S; 56°33'32.14" W) (Figure 1). The
fragment is located in the field of the Submontane Seasonal
Semi-deciduous Forest from Amazon Biome (INPE, 2010)
and suffers the effects of selective logging that occurred in
the 1990s. The climate in the region is Am type according to
Köppen’s classification, with a short dry winter, high annual
rainfall of approximately 3,000 mm year-1, and an average
annual temperature of 25°C (ALVARES et al., 2013).
Figure 1. Allocation and scheme of sample units used for the study
of the Seasonal Semideciduous Forest fragment under the influence
of selective logging, Amazonian Biome, 2022.
Figura 1. Localização e esquema das unidades amostrais utilizadas
para o estudo do fragmento de Floresta Estacional Semidecidual sob
influência da extração seletiva de madeira, Bioma Amazônico, 2022.
For systematic sampling, the fixed area method was
applied to 10 m × 250 m clusters with five subunits of 10 m
× 50 m each, and a minimum border of 15 m was considered.
The allocation of the clusters respected the greatest variation
gradient of the forest, West-East direction due to proximity
to the river (1,010 m) and the slope of the terrain (13.6%)
(Figure 1). All living individuals with a diameter at breast
height (DBH) greater than or equal to 10 cm were measured.
Botanical material of the species that could not be identified
in the field by a parabotanist was collected for taxonomic
analysis and identification in the herbarium of the Federal
University of Mato Grosso (UFMT).
To update and confirm the nomenclature of species,
Brazil’s Flora Species List (BFG, 2022 reflora.jbrj.gov.br)
was used. The delimitation of families followed the APG IV
classification system (THE ANGIOSPERM PHYLOGENY
GROUP, 2016).
The vegetation matrix was composed of the density of 20
species with the greatest importance (VI) in the fragment
(Table 1) in the 25 sampling subunits that were studied, more
details in Rocha (2015). Based on field observations and
literature reviews (CARVALHO, 2006; LORENZI, 2009;
PERES, 2016), the species were classified in ecological
groups and dispersion syndrome types. The succession
classification was based on the terminology by Gandolfi et al.
(1995), and the species were categorized as pioneers, early
secondary, late secondary and due to a lack of information,
non-classified (NC). The dispersion syndromes were based
on the terminology by Van der Pijl (1982) and included
anemochorous, zoochorous, autochorous and, due to a lack
of information, non-classified (NC).
When looking for species associations, Legendre (2005)
suggested transforming the species abundance to control for
differences in total abundance among places, producing more
monotonic correlations between species. Before the
concordance analysis among species, the data were
transformed using Hellinger’s transformation (Equation 1)
(LEGENDRE; GALLAGHER, 2001). The presence of
floristic groups was verified through grouping analysis with
the species association method (LEGENDRE;
LEGENDRE, 2012). Euclidean distance with Hellinger’s
transformation was used as a similarity measure between the
groupings (Equation 2).
𝑦′ =

 (01)
𝐷(𝑦,𝑦) = 𝑦′ 𝑦
 (02)
where: 𝑦′ = the abundance of 𝑗 species in the sampling 𝑥 subunit
transformed; 𝑦 = the abundance of 𝑗 species in the sampling 𝑥
subunit; 𝑦 = the abundance of 𝑗 species in the sampling 𝑥
subunit; 𝑘 = total of species in the sampling 𝑥 subunit.
The Ward’s linking method was used for the dendrogram
elaboration. Ward’s method is a procedure in which the
similarity measure used to unite groupings is calculated as the
sum of the squares between both groupings that present the
lowest increase in the global sum of the squares inside the
groupings (HAIR et al., 2009). According to Dutra et al.
(2004), Ward’s method forms groups based on the minimum
standard deviation among the data of each group.
The data were organized in a data matrix with 20
columns, representing the 20 species with greatest
importance values, and 25 lines, representing the
observations formed by the 25 sampling subunits. The
grouping analysis was processed through R software 2.2-0
(2014) version, mvpart package (DE’ATH, 2007).
Rocha et al.
Nativa, Sinop, v. 10, n. 3, p. 333-340, 2022.
335
Table 1. Species with the greatest importance found in the Seasonal Semideciduous Forest fragment under the influence of selective logging
in Amazonian Biome, with their number of individuals, basal area, phytosociological parameters, succession ecological group and
propagating material dispersion type.
Tabela 1. Espécies de maior importância encontradas no fragmento de Floresta Estacional Semidecidual sob influência do corte seletivo no
bioma Amazônia, com número de indivíduos, área basal, parâmetros fitossociológicos, grupo ecológico de sucessão e tipo de dispersão do
material de propagação.
Yi
Species
N
G
FR
DoR
VI
EG
Disp.
Y1
Qualea paraensis
Ducke
42
8.4011
5.36
14.46
7.32
9.05
ST
AUTO
Y2
Aspidosperma discolor
A.DC.
25
6.2954
3.83
10.84
4.36
6.34
ST
ANE
Y3
Matayba arborescens
(Aubl.) Radlk.
48
3.2019
4.82
5.53
8.35
6.23
P
ZOO
Y4
Vochysia vismiifolia
Spruce ex Warm.
39
3.7899
4.08
6.52
6.79
5.80
ST
AUTO
Y5
Pouteria guianensis
Aubl.
30
3.5305
3.83
6.08
5.23
5.04
ST
ZOO
Y6
Pseudolmedia laevigata
Trécul
20
1.4975
3.57
2.58
3.48
3.21
SI
ZOO
Y7
Xylopia
spp.
22
1.1054
3.83
1.90
3.83
3.19
NC
ZOO
Y8
Nectandra cuspidata
Nees
25
0.9396
3.57
1.62
4.36
3.18
P
ZOO
Y9
Ocotea acutangula
(Miq
.) Mez
19
1.3459
2.55
2.32
3.31
2.73
ST
ZOO
Y10
Tachigali vulgaris
L. G. Silva & H. C. Lima
18
0.9537
3.06
1.64
3.14
2.61
NC
ANE
Y11
Sterigmapetalum obovatum
Kuhlm.
13
1.2410
2.81
2.14
2.26
2.40
NC
NC
Y12
Inga
spp.
10
1.5222
2.03
2.63
1.74
2.13
NC
ZOO
Y13
Erisma uncinatum
Warm.
11
1.2546
2.30
2.16
1.92
2.12
ST
ANE
Y14
Toulicia guianensis
Aubl.
12
0.8503
2.04
1.46
2.09
1.87
SI
ZOO
Y15
Tapirira guianensis
Aubl.
10
0.8480
2.30
1.46
1.74
1.83
SI
ZOO
Y16
Diplotropis purpurea
(Rich.) Amshoff
11
0.9957
1.79
1.71
1.92
1.81
ST
ANE
Y17
Bellucia grossularioides
(L.) Triana
10
1.2088
1.53
2.08
1.74
1.78
P
ZOO
Y18
Licania blackii
Prance
8
0.9868
1.78
1.70
1.39
1.62
NC
NC
Y19
Helicostylis tomentosa
(Poepp. & Endl.) Rusby
8
0.8850
1.79
1.52
1.39
1.57
SI
ZOO
Y20
Cheiloclinium cognatum
(Miers) A.C.Sm.
9
0.5248
2.03
0.91
1.57
1.50
SI
ZOO
Where: Yi = variable that represents the species i; N = number of sampled individuals; G = basal area (m² per ha); FR = relative frequency (%); DoR =
relative dominance (%); DR = relative density (%); VI = importance value (%); EG = ecological group; P = pioneer; SI = early secondary; ST = late
secondary; NC = non-classified; Disp. = propagating material dispersion type; ZOO = zoochorous; ANE = anemochorous; AUTO = autochorous.
Onde: Yi = variável que representa a espécie i; N = número de indivíduos amostrados; G = área basal por hectare (m² por ha); FR = frequência relativa (%);
DoR = dominância relativa (%); DR = densidade relativa (%); VI = valor de importância (%); EG = grupo ecológico; P = pioneira; SI = sencundária inicial;
ST = secundária tardia; NC = não classificada; Disp. = tipo de dispersão de propágulos; ZOO = zoocórica; ANE = anemocórica; AUTO = autocórica.
Concordance analysis, which is based on Kendall’s
concordance coefficient, is used to outline groups of species
that form statistically significant associations. The number of
groupings was established using Kendall’s concordance
coefficient (W Equation 3), together with the permutation
test paired average of Spearman’s correlation, which was
suggested by Legendre (2005). Spearman’s correlations
between the groups and the species were analysed, and a
concordance global test was applied among the species of
each group. With a concordance occurrence, the number of
groups was chosen when the species were correlated.
𝑊 =()
(03)
where: 𝑊 = Kendall’s concordance coefficient; 𝑝 = the number of
variables (judges), among which Spearman’s correlation coefficients
are calculated; 𝑟 = the paired average of Spearman’s correlation.
First, a general all-species independence test is
performed. If the null hypothesis is rejected, groups of
correlated species are searched and, within each group, the
contribution of each species to the global statistics is tested,
using the paired average of Spearman’s correlation. The
method aims at finding the most encompassing assemblages,
i.e. the smallest number of groups containing the largest
number of positively and significantly associated species
(BOCARD et al., 2011).
When two sets of species are specified, the default
correlation analysis includes descriptive statistics for each
specie (𝑟) and pairwise Pearson correlation statistics between
the two sets of variables. For a Spearman correlation, the
Fisher’s z transformation is used to derive its confidence
limits and a p-value under a specified null hypothesis.
The null hypothesis (H0) from Kendall’s concordance
test (W) states that all species are independent, whereas the
alternative hypothesis states that at least one of the species is
concordant with one or some of the other species. The test
was performed for four possibilities: with 3 groups, with 4
groups, with 5 groups and with 6 groups, which guarantees a
minimum of two species per group.
3. RESULTS
Through the Euclidean distance with the Hellinger
transformation, it is possible to verify the similarity between
species and, consequently, between clusters (Table 2). But in
general, the Spearman correlation between the species
studied was low, r ≤ |0.60| (Table 3).
Six floristic groups were determined by Kendall’s
concordance test (W). Although groups 1 and 2 accepted the
null hypothesis (H0) (Table 4), the groups did not have
species with the paired average of Spearman’s negative
correlation (Table 5).
An a posteriori analysis was calculated to determine
which individual species were concordant with one or some
of the other species of the group. By analysing Spearman’s
paired average of each species, six floristic groups were
established (Table 5).
The dendrogram elaborated by Ward’s linking method is
presented in Figure 2 in which the red dashed line represents
the cut-off point cutting for the determination of the number
of groups. None of the groups occurred in all sampling
subunits, and as a Ward’s method characteristic (HAIR et al.,
2009), they presented similar dimensions (Table 6).
Forest fragment grouping analysis under selective logging in Amazonian biome
Nativa, Sinop, v. 10, n. 3, p. 333-340, 2022.
336
Table 2. Euclidean distance with Hellinger’s transformation among the species with the greatest importance values in a Seasonal
Semideciduous Forest fragment under the influence of selective logging, Amazonian Biome, 2014. ns not significant at the level of 5%
error probability; * – significant at the level of 5% error probability.
Tabela 2. Distância euclidiana com a transformação de Hellinger entre as espécies com maior valor de importância em um fragmento de
Floresta Estacional Semidecidual sob influência da exploração seletiva, Bioma Amazônico, 2014. ns não significativo ao nível de 5% de
probabilidade de erro; * – significativo ao nível de 5% de probabilidade de erro.
Y1
Y2
Y3
Y4
Y5
Y6
Y7
Y8
Y9
Y10
Y11
Y12
Y13
Y14
Y15
Y16
Y17
Y18
Y19
Y2
1.294
Y3
0.856
0.987
Y4
1.356
0.945
1.080
Y5
1.104
1.011
0.531
1.173
Y6
1.011
0.942
1.164
0.640
1.116
Y7
1.224
0.989
0.921
0.996
0.795
1.097
Y8
0.847
1.176
0.803
1.100
0.946
1.127
1.155
Y9
1.340
1.073
0.848
0.511
0.933
0.767
0.629
0.972
Y10
1.137
0.887
1.598
0.995
1.358
0.953
0.973
0.849
1.034
Y11
0.932
1.095
1.004
1.481
1.027
1.480
0.924
1.012
1.192
0.941
Y12
0.782
1.308
1.071
0.984
1.488
1.074
0.842
1.167
1.094
0.981
1.108
Y13
0.853
0.868
0.950
1.235
0.815
0.955
1.270
1.297
1.509
1.324
1.217
1.028
Y14
1.052
1.108
0.818
1.124
0.818
0.945
1.123
0.726
0.767
1.154
1.068
1.323
1.273
Y15
1.019
1.184
1.183
1.397
1.097
1.201
0.888
0.864
1.134
0.826
0.564
0.729
1.327
0.880
Y16
1.321
0.708
1.171
1.030
0.900
1.065
1.406
1.187
1.368
0.995
0.901
1.473
0.743
1.180
1.113
Y17
1.290
1.099
1.067
1.003
1.144
0.843
0.975
1.186
1.118
1.265
0.880
1.069
0.925
1.050
0.965
0.631
Y18
0.761
1.372
0.822
0.966
0.797
0.779
0.968
0.665
0.898
1.316
1.020
0.968
0.998
1.203
1.151
1.198
0.844
Y19
1.061
1.019
1.460
1.204
1.060
1.469
1.107
1.073
1.242
0.860
0.943
1.094
0.678
0.914
1.111
0.932
1.119
1.367
Y20
1.092
0.671
0.662
1.046
0.772
0.997
1.183
1.082
1.274
1.414
1.015
1.226
0.565
1.082
1.274
0.673
0.884
0.929
1.081
Table 3. Spearman’s correlation matrix among the species with the greatest importance values in a Seasonal Semideciduous Forest fragment
under the influence of selective logging, Amazonian Biome, 2014. (Underlined values are negative). ns not significant at the level of 5%
error probability; * – significant at the level of 5% error probability.
Tabela 3. Matriz de correlação de Spearman entre as espécies com os maiores valores de importância em um fragmento de Floresta
Estacional Semidecidual sob influência da exploração seletiva, Bioma Amazônico, 2014. (Valores sublinhados são negativos). ns não
significativo ao nível de 5% de probabilidade de erro; * – significativo ao nível de 5% de probabilidade de erro.
Y2 Y3 Y4 Y5 Y6 Y7 Y8 Y9 Y10 Y11 Y12 Y13 Y14 Y15 Y16 Y17 Y18 Y19 Y20
Y1
0.29
ns
0.14
ns
0.36
ns
0.10
ns
0.01
ns
0.22
ns
0.15
ns
0.34
ns
0.14
ns
0.07
ns
0.22
ns
0.15
ns
0.05
ns
0.02
ns
0.32
ns
0.29
ns
0.24
ns
0.06
ns
0.09
ns
Y2
0.01ns
0.06ns
0.01ns
0.06ns
0.01ns
0.18ns
0.07ns
0.11ns
0.10ns
0.31ns
0.13ns
0.11ns
0.18ns
0.29ns
0.10ns
0.37ns
0.02ns
0.33ns
Y3
0.08
ns
0.47*
0.16
ns
0.08
ns
0.20
ns
0.15
ns
0.60*
0.00
ns
0.07
ns
0.05
ns
0.18
ns
0.18
ns
0.17
ns
0.07
ns
0.18
ns
0.46*
0.34
ns
Y4
0.17
ns
0.36
ns
0.00
ns
0.10
ns
0.49
ns
0.00
ns
0.48*
0.02
ns
0.23
ns
0.12
ns
0.40*
0.03
ns
0.00
ns
0.03
ns
0.20
ns
0.05
ns
Y5
0.12ns
0.20ns
0.05ns
0.07ns
0.36ns
0.03ns
0.49*
0.19ns
0.18ns
0.10ns
0.10ns
0.14ns
0.20ns
0.06ns
0.23ns
Y6
0.10
ns
0.13
ns
0.23
ns
0.05
ns
0.48*
0.07
ns
0.05
ns
0.06
ns
0.20
ns
0.06
ns
0.16
ns
0.22
ns
0.47*
0.00
ns
Y7
0.16
ns
0.37
ns
0.03
ns
0.08
ns
0.16
ns
0.27
ns
0.12
ns
0.11
ns
0.41*
0.03
ns
0.03
ns
0.11
ns
0.18
ns
Y8
0.03
ns
0.15
ns
0.01
ns
0.17
ns
0.30
ns
0.27
ns
0.14
ns
0.19
ns
0.19
ns
0.33
ns
0.07
ns
0.08
ns
Y9
0.03ns
0.19ns
0.09ns
0.51*
0.23ns
0.13ns
0.37ns
0.12ns
0.10ns
0.24ns
0.27ns
Y10
0.06
ns
0.02
ns
0.32
ns
0.15
ns
0.17
ns
0.00
ns
0.27
ns
0.32
ns
0.14
ns
0.41*
Y11
0.11
ns
0.22
ns
0.07
ns
0.44*
0.10
ns
0.12
ns
0.02
ns
0.06
ns
0.01
ns
Y12
0.03ns
0.32ns
0.27ns
0.47*
0.07ns
0.03ns
0.09ns
0.23ns
Y13
0.27
ns
0.33
ns
0.26
ns
0.07
ns
0.00
ns
0.32
ns
0.44*
Y14
0.12
ns
0.18
ns
0.05
ns
0.20
ns
0.09
ns
0.08
ns
Y15
0.11ns
0.04ns
0.15ns
0.11ns
0.27ns
Y16
0.37
ns
0.20
ns
0.07
ns
0.33
ns
Y17
0.16
ns
0.12
ns
0.12
ns
Y18
0.37ns
0.07ns
Y19
0.08
ns
Table 4. Results from the Ward concordance test regarding the species with the greatest importance values for six floristic groups established
in the Seasonal Semideciduous Forest fragment under the influence of selective logging, Amazonian Biome, 2014. W = Kendall’s
concordance coefficient; F = Fisher-Snedecor test statistic; = Friedman's Chi-Square test statistic; P = the p-value. * – significant at the
level of 5% error probability.
Tabela 4. Resultados do teste de concordância de Ward quanto às espécies com os maiores valores de importância para seis grupos florísticos
estabelecidos no fragmento de Floresta Estacional Semidecidual sob influência da exploração seletiva, Bioma Amazônico, 2014. W =
coeficiente de concordância de Kendall; F = estatística do teste de Fisher-Snedecor; = estatística do teste Qui-Quadrado de Friedman;
P = o valor p. * – significativo ao nível de 5% de probabilidade de erro.
Tests
Group 1
Group 2
Group 3
Group 4
Group 5
Group 6
W 0.6090 0.5698 0.4760 0.3844 0.5695 0.3437
F
0.1477 0.2530 0.0412 0.0010 0.0023 0.0065
2
9.2296 27.3487 34.2685 46.1250 41.0045 41.2416
P
0.1490 0.2250 0.0490* 0.0010* 0.0040* 0.0050*
Rocha et al.
Nativa, Sinop, v. 10, n. 3, p. 333-340, 2022.
337
Table 5. Paired averages of Spearman’s correlation among the species with the greatest importance values, calculated with Kendall’s
concordance test to determine the ideal number of floristic groups in the Seasonal Semideciduous Forest fragment under the influence of
selective logging, Amazonian Biome, 2014.
Tabela 5. Médias pareadas da correlação de Spearman entre as espécies com os maiores valores de importância, calculadas com o teste de
concordância de Kendall para determinar o número ideal de grupos florísticos no fragmento de Floresta Estacional Semidecidual sob
influência de exploração seletiva de madeira, Bioma Amazônico, 2014.
Test with 3 groups
Test with 4 groups
Test with 5 groups
Test with 6 groups
Group Sp.
r
Group Sp.
r
Group Sp.
r
Group Sp.
r
1
Y1
-
0.0257
1
Y1
-
0.0257
1
Y1
0.2179
1
Y1
0.2179
Y12
0.0772
Y12
0.0772
Y12
0.2179
Y12
0.2179
Y10
0.0470
Y10
0.0470
2
Y10
0.0999
2
Y10
0.1396
Y19
-
0.0295
Y19
-
0.0295
Y19
-
0.0055
Y19
0.1396
Y7
0.0070
Y7
0.0070
Y7
0.0270
3
Y7
0.0942
Y11
0.0981
Y11
0.0981
Y11
0.1572
Y11
0.2562
Y15
0.1438
Y15
0.1438
Y15
0.1526
Y15
0.2740
2
Y2
0.1091
2
Y2
0.1634
3
Y2
0.1634
4
Y2
0.1634
Y13
0.1251
Y13
0.2246
Y13
0.2246
Y13
0.2246
Y16
0.2132
Y16
0.3115
Y16
0.3115
Y16
0.3115
Y17
0.0820
Y17
0.1151
Y17
0.1151
Y17
0.1151
Y20
0.2252
Y20
0.3019
Y20
0.3019
Y20
0.3019
Y14
-
0.1387
3
Y4
0.0884
3
Y4
0.4245
4
Y4
0.4245
5
Y4
0.4245
Y6
0.0679
Y6
0.2965
Y6
0.2965
Y6
0.2965
Y9
0.1788
Y9
0.3612
Y9
0.3612
Y9
0.3612
Y3
0.1253
4
Y3
0.2563
5
Y3
0.2563
6
Y3
0.2563
Y5
0.0840
Y5
0.2270
Y5
0.2270
Y5
0.2270
Y8
0.0646
Y8
0.2149
Y8
0.2149
Y8
0.2149
Y18
0.1788
Y18
0.1280
Y18
0.1280
Y18
0.1280
Y14
0.1086
Y14
0.1086
Y14
0.1086
where: 𝑟 = paired averages of Spearman’s correlation; Yi = species with the greatest importance values, ranging from 1 to 20.
onde: 𝑟 = médias emparelhadas da correlação de Spearman; Yi = espécies com maior valor de importância, variando entre 1 e 20.
Figure 2. Classification of the species with the greatest importance values in six floristic groups through “Ward’s” hierarchical method. The
species were located in the Seasonal Semideciduous Forest fragment under the influence of selective logging, Amazonian Biome, 2014.
Figura 2. Classificação das espécies com os maiores valores de importância em seis grupos florísticos através do método hierárquico de
“Ward”. As espécies foram localizadas no fragmento de Floresta Estacional Semidecidual sob influência da exploração seletiva, Bioma
Amazônico, 2014.
Forest fragment grouping analysis under selective logging in Amazonian biome
Nativa, Sinop, v. 10, n. 3, p. 333-340, 2022.
338
Table 6. Descriptive characteristics of the established groups in the Seasonal Semideciduous Forest fragment under the influence of selective
logging, Amazonian Biome, 2014.
Tabela 6. Características descritivas dos grupos estabelecidos no fragmento de Floresta Estacional Semidecidual sob influência da exploração
seletiva, Bioma Amazônia, 2014.
GROUP
Sample
D
Average
Max
g G
SSub
area
Families
Species
Trees
DBH
DBH
1
24
1.20
2
2
52
42
26.67
72.16
0.5393
10.7862
2
16
0.80
2
2
26
21
17.54
41.22
0.1436
2.8729
3
21
1.05
3
3
45
36
17.91
36.76
0.1901
3.8029
4
21
1.05
5
5
80
64
17.31
50.93
0.2807
5.6133
5
21
1.05
3
3
66
53
18.75
50.93
0.3393
6.7855
6
24
1.20
4
5
123
98
18.46
55.07
0.4953
9.9054
TOTAL
6.35
392
1.9883
MEDIA
21
1.06
65
52
19.44
51.18
0.3314
6.6277
in which: N° SSub = number of sampled subunits in the group; Sample area = group sampled area in hectares (ha); N° Families = number of families in the
group; N° Species = number of species in the group; N° Trees = number of sampled trees in the group; D = sample density in the group by hectare (ha);
DBH = diameter at 1.3 m (cm); Max DBH = maximum diameter (cm); 𝑔 = group basal area for sample subunit (m2.500 m-2); G = group basal area (m² ha-
1).
em que: SSub = número de subunidades amostradas no grupo; Sample area = área amostrada do grupo em hectares (ha); Families = número de
famílias no grupo; N° Species = número de espécies no grupo; N° Trees = número de árvores amostradas no grupo; D = densidade amostral no grupo por
hectare (ha); DBH = diâmetro a 1,3 m (cm); Max DBH = diâmetro máximo (cm); 𝑔 = área basal do grupo por subunidade amostral (m².500 m-2); G = área
basal do grupo por hectare (m2.ha-1).
4. DISCUSSION
In at least one group, all of the tested possibilities
accepted the H0 (P>0.05 and F>0.05). That is, there was at
least one independent species in one group that should be
with only concordant species. Legendre’s recommendation
(2005) is that the group that accepted H0 be redefined until
it is composed of concordant species only. However, in the
present study, working with more than six floristic groups
would make the process unfeasible, as it would result in a
high number of groups with only one species.
Spearman’s paired average is an a posteriori test that is
recommended to identify discordant species inside groups.
However, the test does not reveal whether there are one or
many groups of concordant species among those for which
the independence null hypothesis is rejected. This
information is obtained by calculating Spearman’s correlation
among species and by grouping them inside positively
correlated groups (LEGENDRE, 2005).
The low Spearman’s correlation among the 20 species
with the greatest importance values of the studied fragment
– r ≤ |0.60| – can be attributed to the fact that the fragment
suffered from disturbances due to selective logging (Table 3).
In fragments altered by human interference, clearing and
canopy reconstruction are among the most important factors
in the dynamics. The formation of small clearings increases
the levels of luminosity and temperature, which lead the
species to show some degree of physiological and
morphological adaptation in response to sun or shade
environments, and these variations can occur up to the intra-
specific level (FELFILI et al., 2001; BARROS, 2007).
In general, the logging results in species found at the end
and/or beginning of their cycle and opportunistic and/or
generalist species, which changes the typology’s original
characteristic. Over time, in response to interference, these
species obtained a higher importance value (LARA et al.,
2017).
Although groups 1 and 2 accepted the H0 (Table 4), the
species that composed the groups presented positive
correlations (r) (Table 3). Groups 4 and 6 were the only
groups that presented species with negative correlations (r).
These groups were the largest groups and were composed of
five species (Figure 7). Even with the negative correlation of
Aspidosperma discolor A.DC. species with Bellucia grossularioides
(L.) Triana in group 4, and Toulicia guianensis Aubl. species
with Licania blackii Prance in group 6, the Euclidean distances
with Hellinger’s transformation among species were like the
further groups (Table 2).
Groups 1, 4 and 6 were well distributed throughout the
entire fragment, and they occurred in 96% of the sampled
studied subunits (Table 6). Group 1 was composed of Qualea
paraensis Ducke and Inga sp., which were classified as late
secondary and non-classified (NC), respectively (Table 1).
Species that belong to the late secondary ecological group are
species that evolved in undergrowth in conditions with light
or dense shadow. These species are able to remain in these
conditions for all of their life, or they grow until they reach
the canopy or an emergent condition (GANDOLFI et al.,
1995).
Regarding the propagating material dispersion type,
Qualea paraensisis was classified as autochorous (Table 1),
where fruits fall by gravity due to their own weight or with
explosive dispersion (VAN DER PIJL, 1982). The
autochorous syndrome has been frequently recorded in
secondary forests and is considered more advantageous in
open places (LÓPEZ-MARTÍNEZ et al., 2013). This
advantage explains the individual’s occurrence and their high
average DBH (Table 6) in group 1 in the entire fragment.
Although the fragment has some subsequent glades from
selective logging, the fragment also has good coverage of the
Canopy (Table 1).
The distributions of groups 4 and 6 can be attributed to
the fact that they have classified species in every ecological
group (Table 1). Pioneer species are clearly light-dependent
and do not occur in the undergrowth but rather in glades or
forest borders. Moreover, the early secondary species prefer
average shading conditions or low-intensity luminosity, and
they occur in small glades, borders of large glades, forest
borders or in the non-densely shaded undergrowth
(GANDOLFI et al., 1995).
In addition to the succession characteristics, the
distributions of groups 4 and 6 can also be attributed to the
propagating material dispersion type. Group 4 presented a
predominance of the anemochorous dispersal (Table 1),
which is seeds dispersed by the wind (KULMANN;
Rocha et al.
Nativa, Sinop, v. 10, n. 3, p. 333-340, 2022.
339
RIBEIRO, 2016). Researchers highlight that smaller area are
probably more permeable to the arrival of seeds dispersed by
the wind, which are capable of being transported for long
distances (THOMSON et al., 2011). In fact, it is expected
that in more irregular fragments, which have a greater
proportion of borders than regular fragments, anemochorous
species are efficient in their dispersion and settlement
(GOTTSBERGER; SILBERBAUER-GOTTSBERGER,
2018).
Group 6 presented only zoochorous species (Table 1),
where the propagating material dispersion is intrinsically
related to fauna maintenance (MELO et al., 2016). The
animals necessary for seed dispersion inhabit the lake and
river borders and the forest track around the fragment part
(Figure 1). Zoochorous dispersion is the most important
dispersion mechanism in rainforests (GUILHERME et al.,
2021) and is significantly influenced by the isolation effect
and fragment connectivity (MELO et al., 2016).
The species from groups 2 and 3 were concentrated in
the sampled subunits that were close to the agricultural areas
(Figure 1). The species in both groups were classified as early
secondary species (Table 1). They are also classified as
zoochorous, but group 3 presented more developed
individuals, with higher values for DBH and basal areas
(Table 6). In group 5, the species preferred the subunits that
were closer to the forest tracks (Figure 1), and there was a
predominance of late secondary and zoochorous species
(Table 1).
5. CONCLUSIONS
The species association method through Kendall’s
concordance test (W) is suitable for determining the floristic
groups in the Seasonal Semideciduous Forest fragment under
the influence of selective logging.
The species association and similarity inside each
determined floristic group showed similar auto-ecological
characteristics of the species, mainly the propagating material
dispersion type, and the average DBH of each species.
6. ACKOWLEDGEMENTS
Thanks to CAPES (Coordenação de Aperfeiçoamento de
Pessoal de Nível Superior, Brazil) for providing a scholarship
to the first author and the forester Diogo Cavazzini for
enabling us to carry out this research. Finally, the authors are
grateful to CNPq (Conselho Nacional de Desenvolvimento
Científico e Tecnológico, Brazil).
7. REFERÊNCIAS
ALVARES, C. A.; STAPE, J. L.; SENTELHAS, P. C.;
GONÇALVES, J. L. M.; SPAROVEK, G. Köpen’s
climate classification map for Brazil. Meteorologische
Zeitschrift, v. 22, n. 6, p. 711-728, 2013. DOI:
10.1127/0941-2948/2013/0507.
BARROS, M. G. de. Regeneração natural de espécies
lenhosas e suas correlações com fatores ambientais
na mata de galeria do córrego Pitoco. 138p.
Dissertação [Mestrado em Ciências Florestais]
Universidade de Brasília, Brasília, 2007.
BFG Brazilian Flora 2020: leveraging the power of a
collaborative scientific network. Taxon, v. 71, n. 1, p.
178-198, 2022. DOI: 10.1002/tax.12640
BOCARD, D.; GILLET, F.; LEGENDRE, P. Kendall’s W
Coefficient of Concordance. In: Numerical ecology
with R. New York: Springer, 2011. p. 92-95.
CARVALHO, P. E. R. Espécies arbóreas brasileiras. Vol.
2. Brasília: Embrapa Informação Tecnológica; Colombo,
PR: Embrapa Florestas, 2006. 627p.
CHAI, Z.; WANG, D. A comparison of species composition
and community assemblage of secondary forests between
the birch and pine-oak belts in the mid-altitude zone of
the Qinling Mountains, China. PeerJ, v. 21, n. 4, e1900,
2016. DOI: 10.7717/peerj.1900
DE’ATH, G. 2007. mvpart: multivariate partitioning.
rpart by Terry M Therneau and Beth Atkinson. R port of
rpart by Brian Ripley. Some routines from vegan Jari
Oksanen. Extensions and adaptations of rpart to mvpart
by Glenn De’ath. Available from cran.r-
project.org/package=mvpart.
DUTRA, R. M. O.; SPERANDIO, M.; COELHO, J. O
método Ward de agrupamento de dados e sua
aplicação em associação com os mapas auto-
organizáveis de Kohonen. 2015.
<http://inf.unisul.br/~ines/workcomp/cd/pdfs/2308.
pdf>. Accessed 10 jan 2015.
FARAH, F. T.; MUYLAERT, R. L.; RIBEIRO, M. C.;
RIBEIRO, J. W.; MANGUEIRA, J. R. S. A.; SOUZA, V.
C.; RODRIGUES, R. R. Integrating plant richness in
forest patches can rescue overall biodiversity in human-
modified landscapes. Forest and Ecology
Management, v. 397, p. 78–88. 2017. DOI:
https://doi.org/10.1016/j.foreco.2017.03.038
FELFILI, J. M.; FRANCO, A. C.; FAGG, C. W.; SOUSA-
SILVA, J. C. Desenvolvimento inicial de espécies de
matas de galeria. In: J.F. Ribeiro; C.E.L. Fonseca & J.C.
Sousa-Silva. Cerrado: caracterização e recuperação de
Matas de Galeria. Planaltina: Ed. Embrapa Cerrados,
2011. p. 779-811.
GANDOLFI, S.; LEITÃO FILHO, H. F.; BEZERRA, C. L.
F. Levantamento florístico e caráter sucessional das
espécies arbustivo-arbóreas de uma Floresta Semidecídua
no município de Guarulhos, SP. Brazilian Journal of
Biology, v. 55, n. 4, p. 753-767, 1995.
GOTTSBERGER, G.; SILBERBAUER-GOTTSBERGER,
I. How are pollination and seed dispersal modes in
Cerrado related to stratification? Trends in a cerrado
sensu stricto woodland in southeastern Brazil, and a
comparison with Neotropical forests. Acta Botanica
Brasilica, v. 32, n. 3, p. 434-445, 2018. DOI:
10.1590/0102-33062018abb0186
GUILHERME, F. A. G.; FERREIRA, W. C.; SILVA, G. E.;
MACHADO, D. L. Floristic and structure of different
strata in an urban Semideciduous Forest in Jataí, Goiás
state, Brazil. Ciência Florestal, v. 31, n. 1, p. 456-474,
2021. DOI: https://doi.org/10.5902/1980509847868
HAIR, J. F.; BLACK, W. C.; BABIN, B. J.; ANDERSON, R.
E.; TATHAM, R. L. Análise multivariada de dados. 6.
ed. Porto Alegre: Bookman, 2009. 688p.
INPE. Projeto PANAMAZÔNIA-II: zoneamento da
cobertura vegetal do Estado do Mato Grosso
(ortoretificado). INPE: DSR
(http://www.dsr.inpe.br/panamazon/img/MT_Valdete
1.pdf). 2010.
KUHLMANN, M.; RIBEIRO, J. F. Evolution of seed
dispersal in the Cerrado biome: ecological and
phylogenetic considerations. Acta Botanica Brasilica, v.
Forest fragment grouping analysis under selective logging in Amazonian biome
Nativa, Sinop, v. 10, n. 3, p. 333-340, 2022.
340
30, n. 2, p. 271-282, 2016. DOI:
https://doi.org/10.1590/0102-33062015abb0331
LARA, R. de O.; PEREIRA, I. M.; FERREIRA, E. A.;
PEREIRA, G. A. M.; SILVA, D. V.; SILVA, E. de B.;
ARAÚJO, F. V. de; OLIVEIRA, P. A. Análise de
cobertura, levantamento florístico e fitossiológico de uma
área em recuperação com topsoil na Serra do Espinhaço,
Brasil. Revista Espacios, v. 38, n. 39, p. 31-46, 2017.
LEGENDRE, P. Species Associations: The Kendall
coefficient of concordance revisited. Journal of
Agricultura, Biological and Environmental
Statistics, v. 10, n. 2, p. 226-245, 2005. DOI:
https://doi.org/10.1198/108571105X46642
LEGENDRE, P.; GALLAGHER, E. D. Ecologically
meaningful transformations for ordination of species
data. Oecologia, v. 129, p. 271-280, 2001. DOI:
https://doi.org/10.1007/s004420100716
LEGENDRE, P.; LEGENDRE, L. Numerical Ecology. 3.
ed. USA: Elsevier, 2012. 1006p.
LÓPEZ-MARTÍNEZ, J. O.; SANAPHRE-VILLANUEVA,
L.; DUPUY, J. M.; HERNÁNDEZ-STEFANONI, J. L.;
MEAVE, J. A.; GALLARDO-CRUZ, J. A. β-Diversity of
Functional Groups of Woody Plants in a Tropical Dry
Forest in Yucatan. PLoS ONE, v. 8, n. 9, e73660, 2013.
DOI: 10.1371/journal.pone.0073660
LORENZI, H. Árvores Brasileiras: manual de
identificação e cultivo de plantas arbóreas nativas do
Brasil. Vol. 3. Nova Odessa, SP: Instituto Plantarum,
2009. 384p.
MELO, M. M.; SILVA, C. M.; BARBOSA, C. S.; MORAIS,
M. C.; D’ANUNCIAÇÃO, P. E. R.; SILVA, V. X.;
HASUI, E. Fragment edge and isolation affect the food
web: effects on the strength of interactions among
trophic guilds. Biota Neotropical, v. 16, n. 2,
e20150088, 2016. DOI: 10.1590/1676-0611-BN-2015-
0088.
PERES, M. K. Estratégias de dispersão de sementes no
bioma Cerrado: considerações ecológicas e
filogenéticas. 360p. Tese [Doutorado em Botânica]
Universidade de Brasília, Brasília, 2016.
PRIMACK, R. B.; RODRIGUES, E. Biologia da
conservação. Londrina: Editora Planta, 2001. 338p.
R Core Team (2014). R: A language and environment for
statistical computing. R Foundation for Statistical
Computing, Vienna, Austria. URL https://www.R-
project.org/.
ROCHA, K. J. da; SOUZA, E. C. de; FAVALESSA, C. M.
C.; CALDEIRA, S. F.; MARTINEZ, D. T.;
BRONDANI, G. E. Effect of selective logging on
floristic and structural composition in a forest fragment
from Amazon Biome. Acta Scientiarum. Agronomy, v.
39, n. 2, p. 191-199, 2017. DOI:
10.4025/actasciagron.v39i2.32543.
ROCHA, K. J. Composição e estrutura de grupos
florísticos em fragmento de floresta secundária. 2015.
179f. Dissertação [Mestrado em Ciências Florestais e
Ambientais] Universidade Federal de Mato Grosso,
Cuiabá, 2015.
SÜHS, R. B.; BUDKE, J. C. Spatial distribution, association
patterns and richness of tree species in a seasonal forest
from the Serra Geral formation, southern Brazil. Acta
Botanica Brasilica, v. 25, n. 3, p. 605-617, 2011.
THE ANGIOSPERM PHYLOGENY GROUP. An update
of the Angiosperm Phylogeny Group classification for
the orders and families of flowering plants: APG IV.
Botanical Journal Linnean Society, v. 181, n. 1, p. 1-
20, 2016. DOI: https://doi.org/10.1111/boj.12385
THOMSON, F. J.; MOLES, A. T.; AULD, T. D.;
KINGSFORD, R. T. Seed dispersal distance is more
strongly correlated with plant height than with seed mass.
Journal of Ecology, v. 99, p. 1299-1308, 2011. DOI:
10.1111/j.1365-2745.2011.01867.
VAN DER PIJL, L. Principles of dispersal in higher
plants. Berlin: Springer, 1982. 218p. DOI:
https://doi.org/10.1007/978-3-642-87925-8